protected GFFRecord |
GFFParser.createRecord(GFFDocumentHandler handler,
java.util.List aList,
java.lang.String rest,
java.lang.String comment) |
Actually turns a list of tokens, some value string and a comment into a
GFFRecord and informs
handler.
|
int |
GFFErrorHandler.invalidEnd(java.lang.String token) |
The `end' field of the GFF entry was not a valid value.
|
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(java.lang.String token) |
|
int |
GFFErrorHandler.invalidFrame(java.lang.String token) |
The `frame' field of the GFF entry was not a valid value.
|
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(java.lang.String token) |
|
double |
GFFErrorHandler.invalidScore(java.lang.String token) |
The `score' field of the GFF entry was not a valid value.
|
double |
GFFErrorHandler.SkipRecordErrorHandler.invalidScore(java.lang.String token) |
|
int |
GFFErrorHandler.invalidStart(java.lang.String token) |
The `start' field of the GFF entry was not a valid value.
|
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidStart(java.lang.String token) |
|
StrandedFeature.Strand |
GFFErrorHandler.invalidStrand(java.lang.String token) |
The `strand' field of the GFF entry was not a valid value.
|
StrandedFeature.Strand |
GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(java.lang.String token) |
|