Uses of Package
org.biojava.bio.structure
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Packages that use org.biojava.bio.structure Package Description org.biojava.bio.program.das.dasstructure request a protein structure via DASorg.biojava.bio.structure Interfaces and classes for protein structure (PDB).org.biojava.bio.structure.align Classes for the super-imposition of structures.org.biojava.bio.structure.align.helper Helper classes for structural alignment.org.biojava.bio.structure.align.pairwise Classes for the pairwise alignment of structures.org.biojava.bio.structure.gui A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.org.biojava.bio.structure.gui.events Some event classes for the protein structure GUIs.org.biojava.bio.structure.gui.util Some utility classes for the protein structure GUIs.org.biojava.bio.structure.io Input and Output of Structuresorg.biojava.bio.structure.io.mmcif Input and Output of mmcif filesorg.biojava.bio.structure.server classes for easier management of PDB installations -
Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure Class Description Structure Interface for a structure object. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure Class Description AminoAcid AGroup
that represents an AminoAcid.Atom A simple interface for an Atom.Author Describes author attributes for author information in a PDB file.Chain Defines the interface for a Chain.Compound Created by IntelliJ IDEA.DBRef A class to represent database cross references.Group This is the data structure for a single Group of atoms.HetatomImpl Generic Implementation of a Group interface.JournalArticle PDB-specificPDBHeader A class that contains PDB Header information.PDBRecord An interface implemented by all classes that represent PDB recordsSSBond A simple bean to store disulfid bridge information, the SSBOND records in the PDB files.Structure Interface for a structure object.StructureException An exception during the parsing of a PDB file. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align Class Description Atom A simple interface for an Atom.Structure Interface for a structure object.StructureException An exception during the parsing of a PDB file. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper Class Description Atom A simple interface for an Atom. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise Class Description Atom A simple interface for an Atom.Structure Interface for a structure object.StructureException An exception during the parsing of a PDB file. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui Class Description Structure Interface for a structure object. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.events Class Description Structure Interface for a structure object. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.util Class Description Chain Defines the interface for a Chain.Structure Interface for a structure object.StructureException An exception during the parsing of a PDB file. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io Class Description Chain Defines the interface for a Chain.Group This is the data structure for a single Group of atoms.Structure Interface for a structure object.StructureException An exception during the parsing of a PDB file. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io.mmcif Class Description Structure Interface for a structure object. -
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server Class Description PDBHeader A class that contains PDB Header information.Structure Interface for a structure object.