Class DASAlignmentClient
- java.lang.Object
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- org.biojava.bio.program.das.dasalignment.DASAlignmentClient
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public class DASAlignmentClient extends java.lang.Object
A DAS client that connects to a DAS aligmnent service and returns a Biojava Alignment object.
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Constructor Summary
Constructors Constructor Description DASAlignmentClient()
Constructs a DASAlignmentClient object.DASAlignmentClient(java.lang.String url)
Constructs a DASAlignmentClient object.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Alignment[]
getAlignments()
Returns the alignments.Alignment[]
getAlignments(java.lang.String query_)
Returns the alignments.java.lang.String
getQuery()
Returns the query.void
setQuery(java.lang.String q)
Specifies the query.
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Method Detail
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setQuery
public void setQuery(java.lang.String q)
Specifies the query.- Parameters:
q
- a String specifying the query value- See Also:
getQuery()
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getQuery
public java.lang.String getQuery()
Returns the query.- Returns:
- a String representing the query value
- See Also:
setQuery(java.lang.String)
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getAlignments
public Alignment[] getAlignments(java.lang.String query_) throws java.io.IOException
Returns the alignments.- Parameters:
query_
- a String- Returns:
- an array of Alignment objects
- Throws:
java.io.IOException
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getAlignments
public Alignment[] getAlignments() throws java.io.IOException
Returns the alignments.- Returns:
- an array of Alignment objects
- Throws:
java.io.IOException
- ...
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