Uses of Class
org.biojava.bio.program.fastq.FastqVariant
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Packages that use FastqVariant Package Description org.biojava.bio.program.fastq FASTQ and variants sequence format IO. -
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Uses of FastqVariant in org.biojava.bio.program.fastq
Fields in org.biojava.bio.program.fastq declared as FastqVariant Modifier and Type Field Description static FastqVariant
FastqBuilder. DEFAULT_VARIANT
Default FASTQ sequence format variant,FastqVariant.FASTQ_SANGER
.Methods in org.biojava.bio.program.fastq that return FastqVariant Modifier and Type Method Description FastqVariant
Fastq. getVariant()
Return the FASTQ sequence format variant for this FASTQ formatted sequence.protected FastqVariant
IlluminaFastqReader. getVariant()
Return the FASTQ sequence format variant for this reader.protected FastqVariant
SangerFastqReader. getVariant()
Return the FASTQ sequence format variant for this reader.protected FastqVariant
SolexaFastqReader. getVariant()
Return the FASTQ sequence format variant for this reader.static FastqVariant
FastqVariant. parseFastqVariant(java.lang.String name)
Return the FASTQ sequence format variant with the specified name, if any.static FastqVariant
FastqVariant. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static FastqVariant[]
FastqVariant. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.biojava.bio.program.fastq with parameters of type FastqVariant Modifier and Type Method Description FastqBuilder
FastqBuilder. withVariant(FastqVariant variant)
Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant.
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