Package: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 172 Depends: libc6 (>= 2.34), perl Filename: i386/barriers_1.8.1-1_i386.deb Size: 64584 MD5sum: 8aa3dcc7710afeee7b2e6024ab7c1ab2 SHA1: e83cc8c51d996b73472ec591e4acc90201a5bc21 SHA256: f133078257084148dce769eafb79e15b723c1b9af5853d262445a609bd99f844 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 162 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 61808 MD5sum: 697e5fc61797a9f135ab2878c1cffd96 SHA1: 3c9fcd7eb155963efc4881526a0e368e13941ae3 SHA256: 13f6832dd9e19e0449c814b0b302e41799606b2c94f72bfb656440e0b98e5aaa Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 147 Depends: barriers (= 1.8.1-1) Filename: i386/barriers-dbgsym_1.8.1-1_i386.deb Size: 126896 MD5sum: 3542d53e8657df17c280b50b3144534f SHA1: 80ffb3b0dc906c20da406f200fa0e69baebd0a73 SHA256: c684fbe666a25f8f21cb1f112535d57df6bd709c35ed702eaf65912d22f0ba12 Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 42b3595d1b6b591981b1c37d9db64b5dcceb08b7 c5023fab94f6568b8231ab58dbc04149106ab5cc Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 159 Depends: barriers (= 1.8.1-1) Filename: amd64/barriers-dbgsym_1.8.1-1_amd64.deb Size: 134112 MD5sum: c1f83d8a88bc000e2ca13938eafbd6d5 SHA1: d97a48684330fb139e4741a5fd940d4911d088ed SHA256: 9610ebf917a4fdcf51c9e1f0bb8035495c2754fabaa1f09d67f043cbad06c7ec Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 6e54a4e928f61b966a36c69a1f60501bebeeca1c abbbf5ca0be3fba42bbe4ba8cd37e81ee1cebb38 Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: i386 Maintainer: Maho Nakata Installed-Size: 98141 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.4), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: i386/mlapack-dev_0.8.1-2_i386.deb Size: 18725780 MD5sum: c5f75e54829a696f0c7e7a4808dbda4d SHA1: 169fe1015ac3900dac801f2c5fd74e41052caac4 SHA256: 36068b0cc9f6bc693303876e466f2041b9182889d4d2079e1fb3ce1dae469a7b Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 107928 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 19478248 MD5sum: 227393041efccebd78fb613dbc616c77 SHA1: 1049126c7d37e614f4efb1945eee36db7197dd5c SHA256: 0eee2ab6aab76f49b1ffd941806b2d63804a87ddcb703850f8d1ef27dfcbdac5 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Maho Nakata Installed-Size: 106093 Depends: mlapack-dev (= 0.8.1-2) Filename: i386/mlapack-dev-dbgsym_0.8.1-2_i386.deb Size: 104882288 MD5sum: 3ee619e8e49b5000b2c186c912462812 SHA1: 9eb27a9b8ee149de2b6b86aedd2ab46854574585 SHA256: 9966f418ea74fcc7e46bf571b88af1e50f86dd469eb2e2e88bbe820b6395b1e0 Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 093805effc3498171dba23d214c2d9eef84986e1 3975352c1e0549b8cf64d23587a3b8f03e779610 5b1a334f58716f0009a45bb6f52d802d9e9e4b70 82a1e925e0c90abdae7acecd0c84003191f5ed90 8592296776a99636dd7df43803fec2a49da635f2 999cb3793c56033497f30920d380859902eff902 a20f5e7808103d327aa01c5f618c9963e917357e a7e4afe07290b352349cd39d3feb75da281a0814 be957343d0fe7ee745472e8e57690137ec504c02 c8957358c7e53525680778b57e281f2df345c4bd d847ce458c7915bcf3de29e2ddfde67783eca018 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from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: i386/perl-rna-barrier_1.8.1-1_i386.deb Size: 7524 MD5sum: 6ab0797df2fae921780f0d4f00f06c63 SHA1: 3cb5ff90eb3367baa3dea90ec35630a4f3b011fa SHA256: f86534924e6f21f61a8673b72aae11ba5e2deacd391ecf3fd7fec7135d502166 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 7524 MD5sum: 9550d57ab48fde40a14befe75166c48b SHA1: 8f3ef440cf2a1e6b1f27653c9e1d8799d6080739 SHA256: 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3.11~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.6.4-1_amd64.deb Size: 1810416 MD5sum: 43d746bf6163905d3d6ab30bc59c37d2 SHA1: aa67beb042f9018fd7cb03f3525e3c648d22141b SHA256: d01b14912061d8640c59940500aa3380778662163c32d235eb34466221e2135d Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: python3-rna-dbgsym Source: viennarna Version: 2.6.4-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12468 Depends: python3-rna (= 2.6.4-1) Filename: amd64/python3-rna-dbgsym_2.6.4-1_amd64.deb Size: 11198656 MD5sum: 601a56bfdf00cfc629322f6501c086b2 SHA1: 9c9b3e5d988229058e1defe94f41ba5ceb7b08a9 SHA256: 1d06654ef66d050d47cd3baaa41103be379c107444346ba9529fa4b4e2b8cf72 Section: debug Priority: optional Description: debug symbols for python3-rna Build-Ids: 04b7d217b586a528ccbabde139d2cfb51b4bd0a8 Package: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 42837 Depends: libgomp1 (>= 6), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.6.4-1_amd64.deb Size: 3640580 MD5sum: 50c047f37854cbda7764acd51afdeebb SHA1: 9950db9d09f8157fe88bb5605d23ec4ac3942e8a SHA256: a5f105fed5236e3e3b3eb670ab804b9a659d4fc8ecec512863b68445f5371dab Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dbgsym Source: viennarna Version: 2.6.4-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 29521 Depends: viennarna (= 2.6.4-1) Filename: amd64/viennarna-dbgsym_2.6.4-1_amd64.deb Size: 26010432 MD5sum: fd9aee6aa48a447e4c6738dc8b884a79 SHA1: 1f1902f92e53fad9011ec970829323646fe5c8a9 SHA256: 11ad5faf4a843ea3e14164891e6f721478e1d11e35c39d2d2aaa4baafdf804ae Section: debug Priority: optional Description: debug symbols for viennarna Build-Ids: 01d56f0490f77242bbe1f595f5e3b100766fd1f6 052579537888061a54a2797a3dc872e69e34c689 083234ea820b7634c84f630a6aba9e87830c0af6 0aedf088cf49d172ac1c81376c5ac3bbf5e1c0e3 190d9b98d8fa7d613cd0479104ca34282c7379e2 1e317511476f429c3a2ed2a6ceb379ed97bd120e 26337557e3e1f49fb26485284fb9c28d211fa8b4 279b42459f32ca36324e4158b7269cbe731d6cc5 3c676eb85de84f98c8882e1a6ef7a928e0850e28 6eccde69442c63437e2c69dc69a565a7be7772d9 7322ab54dccceb2f96c7ae1add82fb7d271b5239 768d17d46f7dd3f9005682fba5a9cc65bdeb52a2 7af06ff8f798ce62ff69e1cfeaa1ef06be240514 863b8034ce0af83354239e0781aa894d8cd0b54e 8bfa0a926960243dc0b813477a8495846444ddc9 8f7b2fa5a49b64826e2c057f93740a50dc7754f0 9975340fae1634fb6afc7ef2be507875a7218ea8 9ab28aa0e701769cac8fa24fbd3d127e9af8f329 9dc0387c96b90a17b1a2d40476f9f4205b31c54d a4f53c4a28f2eb3e33ab48a709ba74a2db874787 a88dfa4c6d92c83fcac8c65bf15478d8035786ea b0fd79d3f975d14aa6b46ad1b32742d3fb1b867b b1874a9347f4f12ae046d3fed955ccbc1abcaee7 c1fce1c1dec66c68920be1657e30782c2c75d83c ccf08fa206e850ab1faa7344eacbbd90925e03bf d37a6d5d14aaa348fc31385611ff274670da7c03 d43660c4367a153f50f9c712bd121c3f0bbaaf9c d779de7122767b4535c8ab9b1dc5557914d38d07 dc5d8aec25d7f7dc8646914edb8d2507026a690a eb258f8da03f432962da217696c8ecd6262196ef ee326e818cecbcf8e00cda01d279fc4c4c98afaa f1df774afe688f0ad00682b08fda6e61df1ed70b f8a8c6b1f922ee6e9a9b7a56450bde032f50844d fb467335f5b33cfe5ed8377e8b8edaf9d7aabcf7 Package: viennarna-dev Source: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 91243 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.6.4-1_amd64.deb Size: 28170632 MD5sum: c20509debfc0b054ab7a3145b86d3909 SHA1: adf06a6197701806c498754f9f15e6d6477e678f SHA256: 25dbfc67f585f104d0f5fb8ec4139ba3fd19742709dbaaeceef1d9ccc775dd05 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.6.4-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25422 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.6.4-1_all.deb Size: 12391920 MD5sum: 4489a2a411ee99db84c78f8ce39585b1 SHA1: 9b89d0be2eb572e0839ae3374c37a4ac498941f9 SHA256: 3b073d3414ba5aa17b4744eb46b2ad127a18e9c39ed340b4380f3a31e8e2a863 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format