Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 149 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 57962 MD5sum: d6707509faed807f67556c0fa9cb7d59 SHA1: d978dcbcc45312b2e309ad77484ee1a85716d7a5 SHA256: 076983dddfbdd461bbaf5a16d774aaa764c01ed511383c617aa2a1802ebb8979 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 106567 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23293220 MD5sum: da2ad317002968f70ff23857b89696d3 SHA1: ce3cf17250186c0a2c6d1396041f133ba8de51b9 SHA256: de5845a05154f27ec901da0e40b01a3da33f537cec6b7b6d90da09bbd44fb26d Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10214 Depends: perl (>= 5.34.0-5ubuntu1), perlapi-5.34.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.6.4-1_amd64.deb Size: 1999284 MD5sum: 2dcb7dd7abcf761307345bb5ac023f29 SHA1: 841c50fb62e56d839c431f3d6c6a114735d7c994 SHA256: 0032bf141f37bff390cecbc44dc1ce6fddb1f83869ce9d18b7786840b127c404 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6622 MD5sum: afa5bf7a7a52a1c88a1878f117a8b9ba SHA1: 777a9fee8c9dc1e1cc6f4bd23441e6b1844407bf SHA256: accbbf2ccd35b9c28cfba131b4eadd8d3e847cdd86b88a38e9b3f2bb1190bc6b Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10461 Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.6.4-1_amd64.deb Size: 1932914 MD5sum: 25181fe8a34e6e43265fbf0d2b585412 SHA1: 6f80ca087222b21651301c2aec60640149c01302 SHA256: ed824b6590da8ecd8b96200e01461da8d8bdd37192415643333252fdeaed3b76 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 42766 Depends: libgomp1 (>= 6), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.6.4-1_amd64.deb Size: 3682862 MD5sum: 80d09e110a0195e55c9714b07cae9c6b SHA1: cb0299468350b0aa012234438df85589aa919fdd SHA256: da743ad9c935e0f40608a4d4a17cf1aa0df18d315a21128df012104444faaa44 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.6.4-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 91336 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.6.4-1_amd64.deb Size: 29345092 MD5sum: c5986b9eae33624f253f80923913add7 SHA1: 83d5c68631469e679cd99f9565f21db35980bdcf SHA256: 70f4c4b6edc7bd970fee0c03c5f3adde62e4928410b66e5d130f96055be9be22 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.6.4-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25399 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.6.4-1_all.deb Size: 12376454 MD5sum: 09ff573157db9578a6885855ca516aa0 SHA1: 91c9c0c98fab2956b123ea02a82f6532ba4d3e29 SHA256: e2353b1893234e0d7ef01cff3f14ea6661797ba7e36955dbd362dc4a0140e20d Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format