Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 153 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 58392 MD5sum: e552313cdf8aa1cf1a2f17879cf69ea6 SHA1: 00bc1bea07beb8c1d1afe69711ab2636ac65f466 SHA256: 40b866c21ee9b65ad0418fa0f3ca321710d9e1c2d15e1cd0859d587dec35390e Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 104325 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.3), libstdc++6 (>= 13.1), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23143120 MD5sum: 14b2c71c3a0235a8bfc4fd6890250f51 SHA1: 0515d742a9c2e5826fcaab59374aa42eae982027 SHA256: 3bbb8104f340137b88bd3b54db16cb1a6a5c0228389cbd1f58656b1373791303 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10959 Depends: perl (>= 5.38.2-3.2build2), perlapi-5.38.2, libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 13.1) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.0-1_amd64.deb Size: 2168484 MD5sum: 0ec28ea7c158468862a628071714d6ed SHA1: 59d88c06249b9c462f02f7d8dd214c9b521d6ad2 SHA256: e4b8a77be47a1aabab942f7db858da6d9b13adcf824c382a5231168e38972707 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6546 MD5sum: b3b28d1d96b4c9f731f59c4a1b17356c SHA1: dd87dad65e3efe1b2a801605e062fff350f55384 SHA256: 15f764067beee16ffdd7467864c0cbdeae8b9f079c647a031763a6eb057d7191 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11117 Depends: python3 (<< 3.13), python3 (>= 3.12~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 13.1) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.0-1_amd64.deb Size: 2075846 MD5sum: 36cc80fb4a52d3c6f8c892c0aeaba9da SHA1: a40205380f32e54d5172f6ddde0effbb9b043ca5 SHA256: 59f18c2e0e931ebe6fc73bd9f72d46b3307468da1a6757984b1544db016dde80 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 36557 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 13.1) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.0-1_amd64.deb Size: 3097694 MD5sum: b6cae56e553be841c1ebcfd58dc29d19 SHA1: 288e08cb90f9b48f0ae44d2a7690ca03ee5996fa SHA256: 0e4e1fc685420bd244bcbccf79c348b98a43f2ff5f7ddfe0137e399bbb3b9353 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 95623 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.0-1_amd64.deb Size: 31047088 MD5sum: 1396dff641c455a9e9f0271d45189ff6 SHA1: 12509fd3357c3c2b96a185be7edcc5802957aa03 SHA256: 88bf7112ec6b9d5d1364e700744e8eff4501a7e0be5dc665a01749c6a4c9b84c Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25763 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.0-1_all.deb Size: 11955050 MD5sum: 54c0f98c7f63473b822dcefe96fd8d27 SHA1: f270c9127a1dea48e97dc22b96b45f5218e9dad1 SHA256: 9b2b9cab71c5bc4972a0ad8e743c05f7a8539a9e146eea0ec2d33e94c8e08097 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format