Class BAMQueryMultipleIntervalsIteratorFilter


  • public class BAMQueryMultipleIntervalsIteratorFilter
    extends Object
    Filters out records that do not match any of the given intervals and query type.
    • Constructor Detail

      • BAMQueryMultipleIntervalsIteratorFilter

        public BAMQueryMultipleIntervalsIteratorFilter​(QueryInterval[] intervals,
                                                       boolean contained)
    • Method Detail

      • compareToFilter

        public htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState compareToFilter​(SAMRecord record)
      • compareIntervalToRecord

        public static htsjdk.samtools.BAMIteratorFilter.IntervalComparison compareIntervalToRecord​(QueryInterval interval,
                                                                                                   SAMRecord record)