Interface SAMRecordComparator

    • Method Detail

      • fileOrderCompare

        int fileOrderCompare​(SAMRecord samRecord1,
                             SAMRecord samRecord2)
        Less stringent compare method than the regular compare. If the two records are equal enough that their ordering in a sorted SAM file would be arbitrary, this method returns 0.
        Returns:
        negative if samRecord1 < samRecord2, 0 if equal, else positive