Class VariantContextComparator

    • Constructor Detail

      • VariantContextComparator

        public VariantContextComparator​(List<String> contigs)
      • VariantContextComparator

        public VariantContextComparator​(Collection<VCFContigHeaderLine> headerLines)
        Creates a VariantContextComparator from the given VCF contig header lines. The header lines' index values are used to order the contigs. Throws IllegalArgumentException if there are dupe