Package: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 172 Depends: libc6 (>= 2.34), perl Filename: i386/barriers_1.8.1-1_i386.deb Size: 64608 MD5sum: f30a7936921ca7c30d39f91b2bb29fda SHA1: 099cbbf8dbf579ebf051121d2051e7259a0d7e5b SHA256: ccd6100b9b9c7c5ab6997ee1f584943b3821d34df02ad1184a7c42e17dd4a71b Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 162 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 61796 MD5sum: 69fe83f99a4f4aa24b0d607b4f59f46b SHA1: 4f9bde95efe9102b941191bb3a2a70af31cfec37 SHA256: 8bc3089ff79479aff6894833aea6f82afa7690c02e4c250bc8c950eedde598bd Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 147 Depends: barriers (= 1.8.1-1) Filename: i386/barriers-dbgsym_1.8.1-1_i386.deb Size: 126900 MD5sum: 81dc2a40bd37c4307d8294f122adf0a2 SHA1: 545db1396f94ff7404ea48c5a7521573ee023167 SHA256: 2f78a7e576c342ebad93e0ef1f66ef5b042132ebd9b72e5c0f506e078a8012f8 Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 3f4bf2612c17a889133a198f7598a2c4ee3362cb c5023fab94f6568b8231ab58dbc04149106ab5cc Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 159 Depends: barriers (= 1.8.1-1) Filename: amd64/barriers-dbgsym_1.8.1-1_amd64.deb Size: 134400 MD5sum: 62215ed08678099b8bb7e42312b3d234 SHA1: d2e6c978d33b26b6d1e24cf84aa1fee477d24e6c SHA256: 3602defa580a8cf3a0e246ab59879584b614c528d32635872b472830d3c39a73 Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 1a028281844fa1395aeb351e862f1e2350284ee4 6e54a4e928f61b966a36c69a1f60501bebeeca1c Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: i386 Maintainer: Maho Nakata Installed-Size: 98141 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.4), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: i386/mlapack-dev_0.8.1-2_i386.deb Size: 18725780 MD5sum: c5f75e54829a696f0c7e7a4808dbda4d SHA1: 169fe1015ac3900dac801f2c5fd74e41052caac4 SHA256: 36068b0cc9f6bc693303876e466f2041b9182889d4d2079e1fb3ce1dae469a7b Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 107928 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 19478248 MD5sum: 227393041efccebd78fb613dbc616c77 SHA1: 1049126c7d37e614f4efb1945eee36db7197dd5c SHA256: 0eee2ab6aab76f49b1ffd941806b2d63804a87ddcb703850f8d1ef27dfcbdac5 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Maho Nakata Installed-Size: 106093 Depends: mlapack-dev (= 0.8.1-2) Filename: i386/mlapack-dev-dbgsym_0.8.1-2_i386.deb Size: 104882288 MD5sum: 3ee619e8e49b5000b2c186c912462812 SHA1: 9eb27a9b8ee149de2b6b86aedd2ab46854574585 SHA256: 9966f418ea74fcc7e46bf571b88af1e50f86dd469eb2e2e88bbe820b6395b1e0 Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 093805effc3498171dba23d214c2d9eef84986e1 3975352c1e0549b8cf64d23587a3b8f03e779610 5b1a334f58716f0009a45bb6f52d802d9e9e4b70 82a1e925e0c90abdae7acecd0c84003191f5ed90 8592296776a99636dd7df43803fec2a49da635f2 999cb3793c56033497f30920d380859902eff902 a20f5e7808103d327aa01c5f618c9963e917357e a7e4afe07290b352349cd39d3feb75da281a0814 be957343d0fe7ee745472e8e57690137ec504c02 c8957358c7e53525680778b57e281f2df345c4bd d847ce458c7915bcf3de29e2ddfde67783eca018 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7c7807b3d6538384d84ae6649af9395280f9e6a7 85e651846865b89db76d7ea0fc16bbce8ff5c76e 886d8f5951d0ecddfa50b751fb116386a177f34b 8f31b86699db1f18edba6bb4378e5ee451cb11e5 9884ac8772b1900f72570c43b215dcac09dfa7f5 9a13461d77e075dbdcdc9ad223bcf8df8717c599 a3dd6a7f00326980a1788eed458b3697d044ad27 dc5fa181ab8b8d208103c4ebe6d6ea4cb3fca4ed Package: perl-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10901 Depends: perl (>= 5.36.0-7+deb12u1), perlapi-5.36.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.0-1_amd64.deb Size: 2005484 MD5sum: dbd0991fb7e9761617702239d48c3e8f SHA1: 4b4e757538482882b6eadbb2b2a3458490ce5fc4 SHA256: 1d920623d90db7640a2983aaeb1b7498946efdbc9d73bb988fea09ef4dca817e Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: i386/perl-rna-barrier_1.8.1-1_i386.deb Size: 7524 MD5sum: 6ab0797df2fae921780f0d4f00f06c63 SHA1: 3cb5ff90eb3367baa3dea90ec35630a4f3b011fa SHA256: f86534924e6f21f61a8673b72aae11ba5e2deacd391ecf3fd7fec7135d502166 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 7524 MD5sum: 9550d57ab48fde40a14befe75166c48b SHA1: 8f3ef440cf2a1e6b1f27653c9e1d8799d6080739 SHA256: b4aaa570fd050274ef1d5c8c6fa0834451f23f9ba9091b9d832f230174bce920 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12826 Depends: perl-rna (= 2.7.0-1) Filename: amd64/perl-rna-dbgsym_2.7.0-1_amd64.deb Size: 11782728 MD5sum: 0fc107505c591e92bac8f38257b10a2e SHA1: 95a5bb1229e1b296aed453c3e2ffd9574dd92a26 SHA256: a9943a03aef03a68a848314d86fc416c025352981ceb3e95e202bd0650c1e908 Section: debug Priority: optional Description: debug symbols for perl-rna Build-Ids: c4a8d72c2377b1f561fd88cda2aa8c8bee3f41c6 Package: python3-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11019 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.0-1_amd64.deb Size: 1921488 MD5sum: 4f3c48066d0e78dcb124ebab516702c9 SHA1: 1d32221b4a68a79860566d075a2064e4be8d7125 SHA256: 4ef304d5de6a7fa0b89c9948feda5d460d731ac46eb048133d210b7104b2ea46 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: python3-rna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 13155 Depends: python3-rna (= 2.7.0-1) Filename: amd64/python3-rna-dbgsym_2.7.0-1_amd64.deb Size: 11806440 MD5sum: 7ea5a1d7062cae4cf3e47ad2e05fa3f6 SHA1: 446ecbf9a0bef37f00343ee9770e58ca09f58b50 SHA256: 8bc6103761353abeed50680924b7400f0fc8b6a3652b6d98e2b1717c1a0a2b4a Section: debug Priority: optional Description: debug symbols for python3-rna Build-Ids: 0f9ac17491e10b540c03e2b86be9f9a2fca7b23c Package: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 36656 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.0-1_amd64.deb Size: 3151080 MD5sum: 2a7ae241e95c7adac882a8bee98bb684 SHA1: 10c8574c9c9de9677c4aa57336c93696dd42e774 SHA256: 9c511ec6631041c8f87d464a524d257d59ef52487eabfcad9bfcae00fd3a3edf Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 32584 Depends: viennarna (= 2.7.0-1) Filename: amd64/viennarna-dbgsym_2.7.0-1_amd64.deb Size: 28390512 MD5sum: 8a6c223eedc644b29c97a4924481290e SHA1: 4312606d88695eb9e5b317041dba90472de31015 SHA256: 786a2f201213308d1f9ca7ce6fab80258505ee93d2919571874f502fde412867 Section: debug Priority: optional Description: debug symbols for viennarna Build-Ids: 11fdb033c810d9b348f6793ee30d43a5c3baa669 12c632252e40a68f4b84ac902904a417ae4ba9c4 15d69a253d39e565ff7d4129cb70e19dfc5dbdf5 1e29155f9cdfdf4c25ea230d67615b6c808a6fca 21fbc78a8096f357c71b2698c924abfb0c95d75e 2d55727ee8224a98857609c0987e4a2183c3ed44 2f2c97e06e2251a8a699cfdff705c9181d6d22c3 379a352f2794906dfcbd69a862e66d87d99f6bd9 3b575522f9b2c2a6385e667487a885ecb96340a1 3ebddb1bedafa6011fcd16e63cd16d1e6ad6485d 3f02c4cf23092274da6a42a51c20cec449c278c6 46df361ddd27d9b63d77c89685f422eb6929e7bb 4df36fb2b7ef26c098a386819d6862c0fb152185 5439ae53aceefa00c2040c9883b87e622322f298 5a58deb43f32920d5bbe785e055852d207d0f7a2 649d4466235f1ade6d7bc087001743fa496213b4 67afd1b409accf22e79f2f0bc186269bcd96e144 6df41dde6eca6ebe77ebd191047e360ddee7f55e 70c136dcd1fd898b8ab3f7d6640f66ee74f43fde 7ea44cd14bda37cc7fbc745c9db2ba1633e4553a 7feb0294e9d83af112a62534e3d05cae90508bd1 80ff24ee137098d80c4a53638e8a1c08ff8431f8 811dc4db2090bc9a8be69572af79f25c3cb65085 85c27e31cec3104a8f43c38b52311b40dd45be56 89ef6978cbbe596425428158e9014b065476e591 a4f1f8961f60a5a8082d3e4c339ae17952eee943 acd550ddaf39e2e49287fc8ca42d8112b3db5da9 b9f8461366aaba978a5b59875dde5f10aff324aa bda79545a8d4196a3cd41871325a20480abd731e c4a0d25731e7ffe6e3dc126160f946b6953a5cd7 c5da7e3ae700f00e40807e42466cc3298812b3db d22c7994851bbe4128a177331d10c87d89da41a6 f8a8d9abdea80b212577281176d174baf476cc17 fdfcf4c6cc8090720356898dca3cd9d55e7da150 Package: viennarna-dev Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 95241 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.0-1_amd64.deb Size: 29661588 MD5sum: fc1dc99fc21ae6883dd34035091511d7 SHA1: fee5a995e2d9875cef425fdfe1b26d958afc8c37 SHA256: 5f73894408bd2e06da14557c8ece25b52dbf6738156b7d4d8a2cd6cfa290e23f Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25787 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.0-1_all.deb Size: 11975860 MD5sum: 543c9d1718f9bd5d8de7cf9d3c210b65 SHA1: def003f1d65275ed58d253822e3a3203c03e8c70 SHA256: d37c282ae404292177347fb2b7cdc5eb09bdbbaf52493eada0e0502d1f178dce Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format