RNAlib-2.4.16
snoop.h
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#ifndef VIENNA_RNA_PACKAGE_SNOOP_H
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#define VIENNA_RNA_PACKAGE_SNOOP_H
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#include <
ViennaRNA/datastructures/basic.h
>
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#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
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snoopT
snoopfold(
const
char
*s1,
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const
char
*s2,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshD,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
fullStemEnergy);
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snoopT
*snoop_subopt(
const
char
*s1,
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const
char
*s2,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
fullStemEnergy);
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void
Lsnoop_subopt(
const
char
*s1,
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const
char
*s2,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
alignment_length,
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const
char
*name,
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const
int
fullStemEnergy);
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void
Lsnoop_subopt_list(
const
char
*s1,
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const
char
*s2,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
alignment_length,
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const
char
*name,
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const
int
fullStemEnergy);
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void
Lsnoop_subopt_list_XS(
const
char
*s1,
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const
char
*s2,
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const
int
**access_s1,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
alignment_length,
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const
char
*name,
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const
int
fullStemEnergy);
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void
snoop_subopt_XS(
const
char
*s1,
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const
char
*s2,
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const
int
**access_s1,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
alignment_length,
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const
char
*name,
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const
int
fullStemEnergy);
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snoopT
*alisnoop_subopt(
const
char
**s1,
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const
char
**s2,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2);
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snoopT
*aliLsnoop_subopt_list(
const
char
**s1,
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const
char
**s2,
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int
delta,
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int
w,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshTE,
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const
int
threshSE,
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const
int
threshD,
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const
int
distance,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
alignment_length);
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snoopT
alisnoopfold(
const
char
**s1,
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const
char
**s2,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshD,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2);
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snoopT
snoopfold_XS(
const
char
*s1,
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const
char
*s2,
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const
int
**access_s1,
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const
int
pos,
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const
int
max_pos_j,
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const
int
penalty,
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const
int
threshloop,
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const
int
threshLE,
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const
int
threshRE,
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const
int
threshDE,
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const
int
threshD,
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const
int
half_stem,
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const
int
max_half_stem,
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const
int
min_s2,
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const
int
max_s2,
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const
int
min_s1,
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const
int
max_s1,
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const
int
min_d1,
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const
int
min_d2,
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const
int
fullStemEnergy);
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extern
int
snoop_subopt_sorted;
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#endif
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#endif
snoopT
Data structure for RNAsnoop.
Definition:
basic.h:248
basic.h
Various data structures and pre-processor macros.
ViennaRNA
snoop.h
Generated on Thu Oct 15 2020 11:11:23 for RNAlib-2.4.16 by
1.8.20