RNAlib-2.4.16
ali_plex.h
1 #ifndef VIENNA_RNA_PACKAGE_ALI_PLEX_H
2 #define VIENNA_RNA_PACKAGE_ALI_PLEX_H
3 
5 
6 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
7 
11 duplexT **aliLduplexfold(const char *s1[],
12  const char *s2[],
13  const int threshold,
14  const int extension_cost,
15  const int alignment_length,
16  const int delta,
17  const int fast,
18  const int il_a,
19  const int il_b,
20  const int b_a,
21  const int b_b);
22 
23 
27 duplexT **aliLduplexfold_XS(const char *s1[],
28  const char *s2[],
29  const int **access_s1,
30  const int **access_s2,
31  const int threshold,
32  const int alignment_length,
33  const int delta,
34  const int fast,
35  const int il_a,
36  const int il_b,
37  const int b_a,
38  const int b_b);
39 
40 
41 /*
42  * extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost);
43  * extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1,
44  * const int **access_s2, const int i_pos, const int j_pos, const int threshold);
45  */
46 #endif
47 
48 #endif
basic.h
Various data structures and pre-processor macros.
duplexT
Data structure for RNAduplex.
Definition: basic.h:211