Go to the documentation of this file. 1 #ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2 #define VIENNA_RNA_PACKAGE_PROFILEDIST_H
4 #ifdef VRNA_WARN_DEPRECATED
5 # if defined(__clang__)
6 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
7 # elif defined(__GNUC__)
8 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
10 # define DEPRECATED(func, msg) func
13 # define DEPRECATED(func, msg) func
20 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
69 "Use Make_bp_profile_bppm() instead");
float * Make_bp_profile(int length)
void free_profile(float *T)
free space allocated in Make_bp_profile
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: basic.h:43
Various data structures and pre-processor macros.
void print_bppm(const float *T)
print string representation of probability profile
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired,...