Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 149 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 57962 MD5sum: d6707509faed807f67556c0fa9cb7d59 SHA1: d978dcbcc45312b2e309ad77484ee1a85716d7a5 SHA256: 076983dddfbdd461bbaf5a16d774aaa764c01ed511383c617aa2a1802ebb8979 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 106567 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23293220 MD5sum: da2ad317002968f70ff23857b89696d3 SHA1: ce3cf17250186c0a2c6d1396041f133ba8de51b9 SHA256: de5845a05154f27ec901da0e40b01a3da33f537cec6b7b6d90da09bbd44fb26d Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10835 Depends: perl (>= 5.34.0-5ubuntu1), perlapi-5.34.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.0-1_amd64.deb Size: 2145484 MD5sum: aabfc65c0c6c371371c0c4524c278d04 SHA1: b5a16966b7e9d7a6db7e5a2fa5ea9bd5cbd87d79 SHA256: 38629c6fd627e523bc5c25d538968953e54175be2d9e2f7eec1d246fc3c2f35b Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6622 MD5sum: afa5bf7a7a52a1c88a1878f117a8b9ba SHA1: 777a9fee8c9dc1e1cc6f4bd23441e6b1844407bf SHA256: accbbf2ccd35b9c28cfba131b4eadd8d3e847cdd86b88a38e9b3f2bb1190bc6b Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10993 Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.0-1_amd64.deb Size: 2051926 MD5sum: db61854476e08a5af36473d781115d0c SHA1: ac106ba5f32e7dc74f497bc9b76281444e1f21c7 SHA256: 8f1278f63aff0279ee15c2471a7ce73975bac16afaad8496d13be4b18a90670e Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 36645 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.0-1_amd64.deb Size: 3136558 MD5sum: 328eb7d834e43091a7af94106ead8638 SHA1: e0acd67efb1ef88e7ccf926341822bdc09d4e3d6 SHA256: 46747dd35c4ec8e4a8ca4b92738eea4af07f0a5d018f82236a549fb88640d220 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 95347 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.0-1_amd64.deb Size: 30895410 MD5sum: dab308d1a393a7ab97b1eeb6483a0f95 SHA1: 92c02ef3d8abb4356ef3d74f0e6f3a23acbd9a04 SHA256: eb9c66bfd40e935940f738ad9dbda3225d8db088701e77006fa0b5bb4a85727b Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25763 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.0-1_all.deb Size: 11955832 MD5sum: 3e3e22048c82bdb7e18b9ac23b0278b3 SHA1: 2a6c131ac82111242c667041619a58e0db00f4f5 SHA256: 96a619e8b8f39d8370bb704e24b840c210c0937c924d6f7d866331f7254f4b95 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format