java.lang.Object
org.openscience.jmol.app.surfacetool.Slice

class Slice extends Object
  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    (package private) float
     
    (package private) float
     
    (package private) final javajs.util.P3
     
    (package private) final javajs.util.P3
     
    (package private) final javajs.util.P3
     
    (package private) float
     
    (package private) final javajs.util.P4
     
    (package private) final javajs.util.P4
     
    (package private) float
     
    (package private) final javajs.util.P4
     
    (package private) float
     
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Modifier and Type
    Method
    Description
    (package private) javajs.util.P4
     
    (package private) Slice
     
    (package private) static void
    makePlane(float length, float angleXY, float anglefromZ, javajs.util.P4 result)
     
    (package private) void
    setSlice(float angleXY, float anglefromZ, float position, float thickness, javajs.util.P3 boundBoxCenter, javajs.util.V3 boundBoxVec, boolean useMolecular)
    Sets the right plane and left plane bounding a slice.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  • Field Details

    • leftPlane

      final javajs.util.P4 leftPlane
    • middle

      final javajs.util.P4 middle
    • rightPlane

      final javajs.util.P4 rightPlane
    • angleXY

      float angleXY
    • anglefromZ

      float anglefromZ
    • position

      float position
    • thickness

      float thickness
    • boundBoxNegCorner

      final javajs.util.P3 boundBoxNegCorner
    • boundBoxPosCorner

      final javajs.util.P3 boundBoxPosCorner
    • boundBoxCenter

      final javajs.util.P3 boundBoxCenter
    • diagonal

      float diagonal
  • Constructor Details

    • Slice

      Slice()
  • Method Details

    • makePlane

      static void makePlane(float length, float angleXY, float anglefromZ, javajs.util.P4 result)
      Parameters:
      length - (float) length of vector from origin
      angleXY - (float) angle of vector projection in XY plane (radians)
      anglefromZ - (float) angle of vector from Z axis (radians)
      result - (Point4f) meeting the Jmol definition of a plane.
    • setSlice

      void setSlice(float angleXY, float anglefromZ, float position, float thickness, javajs.util.P3 boundBoxCenter, javajs.util.V3 boundBoxVec, boolean useMolecular)
      Sets the right plane and left plane bounding a slice.
      Parameters:
      angleXY - (float)angle in radians from X-axis to projection in XY plane
      anglefromZ - (float)angle in radians from z-axis to vector
      position - (float) position from origin of slice center along vector in molecular units
      thickness - (float) thickness of slice in molecular units.
      boundBoxCenter - (Point3f) center of the boundbox in molecular coordinates
      boundBoxVec - (Vector3f) vector from the boundbox center to the most positive corner.
      useMolecular - (boolean) if true angles and positions are relative to the origin of the molecular coordinate system. If false angles and position are relative to the center of the boundbox, which is usually more intuitive for the vwr as this is typically close to the center of the viewed object.
    • getSlice

      Slice getSlice()
      Returns:
      returns this Slice
    • getMiddle

      javajs.util.P4 getMiddle()